GSE: GSE65785 GSE Title: Measuring Absolute RNA Copy Numbers at High Tem... Xenbase Article Id: XB-ART-51804 Pubmed Id: 26774488 FTP Location: ftp:/xenbaseturbofrog.org/genomics/GEO5/GSE65785/XENTR_10.0/RNA-Seq/ NGS Data: RNA-Seq Folder Descriptions: BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes. ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively. DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes. Track # Track Name BigWig Control Track # DE-Analysis GSMs 1216 WE - NF1 (0hpf) - ClutchA GSM1606175_1216.bw GSM1606175 1305 WE - NF1 (0.5hpf) - ClutchA GSM1606176_1305.bw GSM1606176 1255 WE - NF2- (1hpf) - ClutchA GSM1606177_1255.bw GSM1606177 1281 WE - NF3 (1.5hpf) - ClutchA GSM1606178_1281.bw GSM1606178 1223 WE - NF5 (2hpf) - ClutchA GSM1606179_1223.bw GSM1606179 1206 WE - NF6 (2.5hpf) - ClutchA GSM1606180_1206.bw GSM1606180 1301 WE - NF7 (3hpf) - ClutchA GSM1606181_1301.bw GSM1606181 1201 WE - NF7 (3.5hpf) - ClutchA GSM1606182_1201.bw GSM1606182 1212 WE - NF8 (4hpf) - ClutchA GSM1606183_1212.bw GSM1606183 1278 WE - NF9 (4.5hpf) - ClutchA GSM1606184_1278.bw GSM1606184 1297 WE - NF9 (5hpf) - ClutchA GSM1606185_1297.bw GSM1606185 1258 WE - NF9 (5.5hpf) - ClutchA GSM1606186_1258.bw GSM1606186 1289 WE - NF9 (6hpf) - ClutchA GSM1606187_1289.bw GSM1606187 1197 WE - NF10 (6.5hpf) - ClutchA GSM1606188_1197.bw GSM1606188 1293 WE - NF10 (7hpf) - ClutchA GSM1606189_1293.bw GSM1606189 1230 WE - NF10 (7.5hpf) - ClutchA GSM1606190_1230.bw GSM1606190 1290 WE - NF11 (8hpf) - ClutchA GSM1606191_1290.bw GSM1606191 1244 WE - NF12 (8.5hpf) - ClutchA GSM1606192_1244.bw GSM1606192 1300 WE - NF12 (9hpf) - ClutchA GSM1606193_1300.bw GSM1606193 1243 WE - NF12 (9.5hpf) - ClutchA GSM1606194_1243.bw GSM1606194 1241 WE - NF12 (10hpf) - ClutchA GSM1606195_1241.bw GSM1606195 1280 WE - NF12.5 (10.5hpf) - ClutchA GSM1606196_1280.bw GSM1606196 1266 WE - NF12.5 (11hpf) - ClutchA GSM1606197_1266.bw GSM1606197 1203 WE - NF12.5 (11.5hpf) - ClutchA GSM1606198_1203.bw GSM1606198,GSM1606265 1260 WE - NF13 (12hpf) - ClutchA GSM1606199_1260.bw GSM1606199 1250 WE - NF13 (12.5hpf) - ClutchA GSM1606200_1250.bw GSM1606200 1276 WE - NF13 (13hpf) - ClutchA GSM1606201_1276.bw GSM1606201 1314 WE - NF14 (13.5hpf) - ClutchA GSM1606202_1314.bw GSM1606202 1220 WE - NF14 (14hpf) - ClutchA GSM1606203_1220.bw GSM1606203 1199 WE - NF15 (14.5hpf) - ClutchA GSM1606204_1199.bw GSM1606204 1247 WE - NF16-17 (15hpf) - ClutchA GSM1606205_1247.bw GSM1606205 1294 WE - NF18-19 (15.5hpf) - ClutchA GSM1606206_1294.bw GSM1606206 1286 WE - NF20 (16hpf) - ClutchA GSM1606207_1286.bw GSM1606207 1190 WE - NF21 (16.5hpf) - ClutchA GSM1606208_1190.bw GSM1606208 1215 WE - NF21 (17hpf) - ClutchA GSM1606209_1215.bw GSM1606209 1205 WE - NF22 (17.5hpf) - ClutchA GSM1606210_1205.bw GSM1606210 1285 WE - NF22 (18hpf) - ClutchA GSM1606211_1285.bw GSM1606211 1188 WE - NF23 (18.5hpf) - ClutchA GSM1606212_1188.bw GSM1606212 1232 WE - NF24 (19hpf) - ClutchA GSM1606213_1232.bw GSM1606213 1292 WE - NF24 (19.5hpf) - ClutchA GSM1606214_1292.bw GSM1606214 1273 WE - NF24 (20hpf) - ClutchA GSM1606215_1273.bw GSM1606215 1251 WE - NF24 (20.5hpf) - ClutchA GSM1606216_1251.bw GSM1606216 1191 WE - NF25 (21hpf) - ClutchA GSM1606217_1191.bw GSM1606217 1272 WE - NF25 (21.5hpf) - ClutchA GSM1606218_1272.bw GSM1606218,GSM1606266 1315 WE - NF25 (22hpf) - ClutchA GSM1606219_1315.bw GSM1606219 1312 WE - NF26 (22.5hpf) - ClutchA GSM1606220_1312.bw GSM1606220 1306 WE - NF26 (23hpf) - ClutchA GSM1606221_1306.bw GSM1606221 1319 WE - NF26 (23.5hpf) - ClutchA GSM1606222_1319.bw GSM1606222 1233 WE - NF27 (24hpf) - ClutchA GSM1606223_1233.bw GSM1606223 1287 WE - NF27 (25hpf) - ClutchA GSM1606224_1287.bw GSM1606224 1316 WE - NF27 (26hpf) - ClutchA GSM1606225_1316.bw GSM1606225 1193 WE - NF28 (27hpf) - ClutchA GSM1606226_1193.bw GSM1606226 1262 WE - NF28 (28hpf) - ClutchA GSM1606227_1262.bw GSM1606227 1209 WE - NF29/30 (29hpf) - ClutchA GSM1606228_1209.bw GSM1606228 1196 WE - NF31 (30hpf) - ClutchA GSM1606229_1196.bw GSM1606229,GSM1606267 1298 WE - NF32 (31hpf) - ClutchA GSM1606230_1298.bw GSM1606230 1189 WE - NF32 (32hpf) - ClutchA GSM1606231_1189.bw GSM1606231 1283 WE - NF33/34 (33hpf) - ClutchA GSM1606232_1283.bw GSM1606232,GSM1606268 1187 WE - NF33/34 (34hpf) - ClutchA GSM1606233_1187.bw GSM1606233 1284 WE - NF33/34 (35hpf) - ClutchA GSM1606234_1284.bw GSM1606234 1302 WE - NF35/36 (36hpf) - ClutchA GSM1606235_1302.bw GSM1606235 1249 WE - NF35/36 (37hpf) - ClutchA GSM1606236_1249.bw GSM1606236 1308 WE - NF37/38 (38hpf) - ClutchA GSM1606237_1308.bw GSM1606237 1282 WE - NF37/38 (39hpf) - ClutchA GSM1606238_1282.bw GSM1606238 1277 WE - NF37/38 (40hpf) - ClutchA GSM1606239_1277.bw GSM1606239 1288 WE - NF39 (41hpf) - ClutchA GSM1606240_1288.bw GSM1606240 1195 WE - NF39 (42hpf) - ClutchA GSM1606241_1195.bw GSM1606241 1200 WE - NF39 (44hpf) - ClutchA GSM1606242_1200.bw GSM1606242 1259 WE - NF39 (45hpf) - ClutchA GSM1606243_1259.bw GSM1606243 1210 WE - NF40 (46hpf) - ClutchA GSM1606244_1210.bw GSM1606244 1238 WE - NF40 (47hpf) - ClutchA GSM1606245_1238.bw GSM1606245 1198 WE - NF40 (48hpf) - ClutchA GSM1606246_1198.bw GSM1606246 1279 WE - NF40 (49hpf) - ClutchA GSM1606247_1279.bw GSM1606247 1208 WE - NF40 (50hpf) - ClutchA GSM1606248_1208.bw GSM1606248 1228 WE - NF41 (51hpf) - ClutchA GSM1606249_1228.bw GSM1606249 1222 WE - NF41 (52hpf) - ClutchA GSM1606250_1222.bw GSM1606250,GSM1606269 1221 WE - NF41 (53hpf) - ClutchA GSM1606251_1221.bw GSM1606251 1254 WE - NF41 (54hpf) - ClutchA GSM1606252_1254.bw GSM1606252 1246 WE - NF41 (55hpf) - ClutchA GSM1606253_1246.bw GSM1606253 1192 WE - NF42 (56hpf) - ClutchA GSM1606254_1192.bw GSM1606254 1261 WE - NF42 (57hpf) - ClutchA GSM1606255_1261.bw GSM1606255 1257 WE - NF42 (58hpf) - ClutchA GSM1606256_1257.bw GSM1606256 1291 WE - NF42 (59hpf) - ClutchA GSM1606257_1291.bw GSM1606257 1317 WE - NF42 (60hpf) - ClutchA GSM1606258_1317.bw GSM1606258 1295 WE - NF42 (61hpf) - ClutchA GSM1606259_1295.bw GSM1606259 1253 WE - NF42 (62hpf) - ClutchA GSM1606260_1253.bw GSM1606260 1245 WE - NF43 (63hpf) - ClutchA GSM1606261_1245.bw GSM1606261 1185 WE - NF43 (64hpf) - ClutchA GSM1606262_1185.bw GSM1606262,GSM1606270 1237 WE - NF43 (65hpf) - ClutchA GSM1606263_1237.bw GSM1606263 1299 WE - NF43 (66hpf) - ClutchA GSM1606264_1299.bw GSM1606264 1267 WE - NF1 (0hpf) - ClutchA rd GSM1606271_1267.bw GSM1606271 1271 WE - NF9 (5hpf) - ClutchA rd GSM1606272_1271.bw GSM1606272 1224 WE - NF1 (0.5hpf) - ClutchA rd GSM1606273_1224.bw GSM1606273 1313 WE - NF9 (5.5hpf) - ClutchA rd GSM1606274_1313.bw GSM1606274 1236 WE - NF9 (6hpf) - ClutchA rd GSM1606275_1236.bw GSM1606275 1213 WE - NF10 (6.5hpf) - ClutchA rd GSM1606276_1213.bw GSM1606276 1310 WE - NF10 (7hpf) - ClutchA rd GSM1606277_1310.bw GSM1606277 1240 WE - NF10 (7.5hpf) - ClutchA rd GSM1606278_1240.bw GSM1606278 1184 WE - NF11 (8hpf) - ClutchA rd GSM1606279_1184.bw GSM1606279 1239 WE - NF12 (8.5hpf) - ClutchA rd GSM1606280_1239.bw GSM1606280 1274 WE - NF12 (9hpf) - ClutchA rd GSM1606281_1274.bw GSM1606281 1225 WE - NF12 (9.5hpf) - ClutchA rd GSM1606282_1225.bw GSM1606282 1218 WE - NF12 (10hpf) - ClutchA rd GSM1606283_1218.bw GSM1606283 1202 WE - NF2- (1hpf) - ClutchA rd GSM1606284_1202.bw GSM1606284 1263 WE - NF12.5 (10.5hpf) - ClutchA rd GSM1606285_1263.bw GSM1606285 1183 WE - NF12.5 (11hpf) - ClutchA rd GSM1606286_1183.bw GSM1606286 1270 WE - NF12.5 (11.5hpf) - ClutchA rd GSM1606287_1270.bw GSM1606287 1226 WE - NF13 (12hpf) - ClutchA rd GSM1606288_1226.bw GSM1606288 1311 WE - NF13 (12.5hpf) - ClutchA rd GSM1606289_1311.bw GSM1606289 1256 WE - NF13 (13hpf) - ClutchA rd GSM1606290_1256.bw GSM1606290 1231 WE - NF14 (13.5hpf) - ClutchA rd GSM1606291_1231.bw GSM1606291 1186 WE - NF14 (14hpf) - ClutchA rd GSM1606292_1186.bw GSM1606292 1204 WE - NF15 (14.5hpf) - ClutchA rd GSM1606293_1204.bw GSM1606293 1227 WE - NF16-17 (15hpf) - ClutchA rd GSM1606294_1227.bw GSM1606294 1318 WE - NF3 (1.5hpf) - ClutchA rd GSM1606295_1318.bw GSM1606295 1182 WE - NF18-19 (15.5hpf) - ClutchA rd GSM1606296_1182.bw GSM1606296 1307 WE - NF20 (16hpf) - ClutchA rd GSM1606297_1307.bw GSM1606297 1234 WE - NF21 (16.5hpf) - ClutchA rd GSM1606298_1234.bw GSM1606298 1242 WE - NF21 (17hpf) - ClutchA rd GSM1606299_1242.bw GSM1606299 1269 WE - NF22 (17.5hpf) - ClutchA rd GSM1606300_1269.bw GSM1606300 1252 WE - NF22 (18hpf) - ClutchA rd GSM1606301_1252.bw GSM1606301 1211 WE - NF23 (18.5hpf) - ClutchA rd GSM1606302_1211.bw GSM1606302 1304 WE - NF24 (19hpf) - ClutchA rd GSM1606303_1304.bw GSM1606303 1268 WE - NF24 (19.5hpf) - ClutchA rd GSM1606304_1268.bw GSM1606304 1219 WE - NF24 (20hpf) - ClutchA rd GSM1606305_1219.bw GSM1606305 1264 WE - NF5 (2hpf) - ClutchA rd GSM1606306_1264.bw GSM1606306 1303 WE - NF24 (20.5hpf) - ClutchA rd GSM1606307_1303.bw GSM1606307 1265 WE - NF25 (21hpf) - ClutchA rd GSM1606308_1265.bw GSM1606308 1194 WE - NF25 (21.5hpf) - ClutchA rd GSM1606309_1194.bw GSM1606309 1248 WE - NF25 (22hpf) - ClutchA rd GSM1606310_1248.bw GSM1606310 1309 WE - NF26 (22.5hpf) - ClutchA rd GSM1606311_1309.bw GSM1606311 1235 WE - NF26 (23hpf) - ClutchA rd GSM1606312_1235.bw GSM1606312 1217 WE - NF26 (23.5hpf) - ClutchA rd GSM1606313_1217.bw GSM1606313 1229 WE - NF6 (2.5hpf) - ClutchA rd GSM1606314_1229.bw GSM1606314 1296 WE - NF7 (3hpf) - ClutchA rd GSM1606315_1296.bw GSM1606315 1275 WE - NF7 (3.5hpf) - ClutchA rd GSM1606316_1275.bw GSM1606316 1214 WE - NF8 (4hpf) - ClutchA rd GSM1606317_1214.bw GSM1606317 1207 WE - NF9 (4.5hpf) - ClutchA rd GSM1606318_1207.bw GSM1606318 1765 WE - NF1 (0hpf) - ClutchB GSM1606319_1765.bw GSM1606319 1764 WE - NF1 (0.5hpf) - ClutchB GSM1606320_1764.bw GSM1606320 1787 WE - NF2- (1hpf) - ClutchB GSM1606321_1787.bw GSM1606321 1766 WE - NF3 (1.5hpf) - ClutchB GSM1606322_1766.bw GSM1606322 1798 WE - NF5 (2hpf) - ClutchB GSM1606323_1798.bw GSM1606323 1788 WE - NF6 (2.5hpf) - ClutchB GSM1606324_1788.bw GSM1606324 1800 WE - NF7 (3hpf) - ClutchB GSM1606325_1800.bw GSM1606325 1799 WE - NF7 (3.5hpf) - ClutchB GSM1606326_1799.bw GSM1606326 1802 WE - NF8 (4hpf) - ClutchB GSM1606327_1802.bw GSM1606327 1801 WE - NF9 (4.5hpf) - ClutchB GSM1606328_1801.bw GSM1606328 1804 WE - NF9 (5hpf) - ClutchB GSM1606329_1804.bw GSM1606329 1803 WE - NF9 (5.5hpf) - ClutchB GSM1606330_1803.bw GSM1606330 1806 WE - NF9 (6hpf) - ClutchB GSM1606331_1806.bw GSM1606331 1805 WE - NF10 (6.5hpf) - ClutchB GSM1606332_1805.bw GSM1606332 1811 WE - NF10 (7hpf) - ClutchB GSM1606333_1811.bw GSM1606333 1810 WE - NF10 (7.5hpf) - ClutchB GSM1606334_1810.bw GSM1606334 1812 WE - NF11 (8hpf) - ClutchB GSM1606335_1812.bw GSM1606335 1809 WE - NF12 (8.5hpf) - ClutchB GSM1606336_1809.bw GSM1606336 1807 WE - NF12 (9hpf) - ClutchB GSM1606337_1807.bw GSM1606337 1808 WE - NF12 (9.5hpf) - ClutchB GSM1606338_1808.bw GSM1606338 1768 WE - NF12 (10hpf) - ClutchB GSM1606339_1768.bw GSM1606339 1767 WE - NF12.5 (10.5hpf) - ClutchB GSM1606340_1767.bw GSM1606340 1770 WE - NF12.5 (11hpf) - ClutchB GSM1606341_1770.bw GSM1606341 1769 WE - NF12.5 (11.5hpf) - ClutchB GSM1606342_1769.bw GSM1606342 1772 WE - NF13 (12hpf) - ClutchB GSM1606343_1772.bw GSM1606343 1771 WE - NF13 (12.5hpf) - ClutchB GSM1606344_1771.bw GSM1606344 1774 WE - NF13 (13hpf) - ClutchB GSM1606345_1774.bw GSM1606345 1773 WE - NF14 (13.5hpf) - ClutchB GSM1606346_1773.bw GSM1606346 1776 WE - NF14 (14hpf) - ClutchB GSM1606347_1776.bw GSM1606347 1775 WE - NF15 (14.5hpf) - ClutchB GSM1606348_1775.bw GSM1606348 1778 WE - NF16-17 (15hpf) - ClutchB GSM1606349_1778.bw GSM1606349 1777 WE - NF18-19 (15.5hpf) - ClutchB GSM1606350_1777.bw GSM1606350 1780 WE - NF20 (16hpf) - ClutchB GSM1606351_1780.bw GSM1606351 1779 WE - NF21 (16.5hpf) - ClutchB GSM1606352_1779.bw GSM1606352 1782 WE - NF21 (17hpf) - ClutchB GSM1606353_1782.bw GSM1606353 1781 WE - NF22 (17.5hpf) - ClutchB GSM1606354_1781.bw GSM1606354 1784 WE - NF22 (18hpf) - ClutchB GSM1606355_1784.bw GSM1606355 1783 WE - NF23 (18.5hpf) - ClutchB GSM1606356_1783.bw GSM1606356 1786 WE - NF24 (19hpf) - ClutchB GSM1606357_1786.bw GSM1606357 1785 WE - NF24 (19.5hpf) - ClutchB GSM1606358_1785.bw GSM1606358 1790 WE - NF24 (20hpf) - ClutchB GSM1606359_1790.bw GSM1606359 1789 WE - NF24 (20.5hpf) - ClutchB GSM1606360_1789.bw GSM1606360 1792 WE - NF25 (21hpf) - ClutchB GSM1606361_1792.bw GSM1606361 1791 WE - NF25 (21.5hpf) - ClutchB GSM1606362_1791.bw GSM1606362 1794 WE - NF25 (22hpf) - ClutchB GSM1606363_1794.bw GSM1606363 1793 WE - NF26 (22.5hpf) - ClutchB GSM1606364_1793.bw GSM1606364 1796 WE - NF26 (23hpf) - ClutchB GSM1606365_1796.bw GSM1606365 1795 WE - NF26 (23.5hpf) - ClutchB GSM1606366_1795.bw GSM1606366 1797 WE - NF27 (24hpf) - ClutchB GSM1606367_1797.bw GSM1606367