GSE: GSE92366
GSE Title: H3K4 Methylation-Mediated Memory of an Active T...
Xenbase Article Id: XB-ART-54691
Pubmed Id: 28366589
Download Location: https://bigFrog.xenbase.org/xenbase/genomics/GEO/GSE92366/XENLA_10.1/RNA-Seq/
NGS Data: RNA-Seq
Folder Descriptions:
	BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes.
	ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively.
	DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes.

Track #	Track Name	BigWig	Control Track #	DE-Analysis	GSMs
15618	ectoderm - NF11	GSM2428183_15618.bw			GSM2428183,GSM2428184,GSM2428185,GSM2428186
15622	ectoderm - NF11	GSM2428191_15622.bw			GSM2428191,GSM2428192,GSM2428193,GSM2428194
15621	ectoderm - NF11	GSM2428200_15621.bw			GSM2428200,GSM2428201,GSM2428202
15639	endoderm + Mmu.kdm5b{del} - NF18	GSM2428210_15639.bw			GSM2428210,GSM2428211
15619	ectoderm - NF11	GSM2428212_15619.bw			GSM2428212,GSM2428213,GSM2428214,GSM2428215
15640	endoderm + Mmu.kdm5b{del} - NF18	GSM2428226_15640.bw			GSM2428226,GSM2428227
15623	ectoderm - NF11	GSM2428228_15623.bw			GSM2428228,GSM2428229,GSM2428230,GSM2428231
15637	endoderm + h3-3a.L - NF21	GSM2428239_15637.bw			GSM2428239,GSM2428240
15620	ectoderm - NF11	GSM2428243_15620.bw			GSM2428243,GSM2428244,GSM2428245,GSM2428246
15633	endoderm - NF21	GSM2428182_15633.bw			GSM2428182
15624	ectoderm + SCNT endoderm cell - NF11	GSM2428187_15624.bw	15618	SRR5109837_vs_SRR5109841.txt	GSM2428187,GSM2428188,GSM2428189
15634	endoderm - NF21	GSM2428190_15634.bw			GSM2428190
15626	ectoderm + SCNT endoderm cell - NF11	GSM2428195_15626.bw	15622	SRR5109845_vs_SRR5109849.txt	GSM2428195,GSM2428196,GSM2428197,GSM2428198
15635	endoderm - NF21	GSM2428199_15635.bw			GSM2428199
15625	ectoderm + SCNT endoderm cell - NF11	GSM2428203_15625.bw	15621	SRR5109854_vs_SRR5109857.txt	GSM2428203,GSM2428204,GSM2428205,GSM2428206,GSM2428207
15638	endoderm + Mmu.kdm5b{H499A_del} - NF18	GSM2428208_15638.bw	15639	SRR5109864_vs_SRR5109862.txt	GSM2428208,GSM2428209
15629	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	GSM2428216_15629.bw	15619	SRR5109866_vs_SRR5109870.txt	GSM2428216,GSM2428217,GSM2428218,GSM2428219
15631	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	GSM2428220_15631.bw	15619	SRR5109866_vs_SRR5109874.txt	GSM2428220,GSM2428221,GSM2428222,GSM2428223
15645	endoderm + Mmu.kdm5b{H499A_del} - NF18	GSM2428224_15645.bw	15640	SRR5109880_vs_SRR5109878.txt	GSM2428224,GSM2428225
15630	ectoderm + SCNT endoderm cell + Mmu.kdm5b{H499A_del} - NF11	GSM2428232_15630.bw	15623	SRR5109882_vs_SRR5109886.txt	GSM2428232,GSM2428233,GSM2428234,GSM2428235
15632	ectoderm + SCNT endoderm cell + Mmu.kdm5b{del} - NF11	GSM2428236_15632.bw	15623	SRR5109882_vs_SRR5109890.txt	GSM2428236,GSM2428237,GSM2428238
15636	endoderm + h3-3a.L{K4M} - NF21	GSM2428241_15636.bw	15637	SRR5109893_vs_SRR5109895.txt	GSM2428241,GSM2428242
15628	ectoderm + SCNT endoderm cell + h3-3a.L - NF11	GSM2428247_15628.bw	15620	SRR5109897_vs_SRR5109901.txt	GSM2428247,GSM2428248,GSM2428249,GSM2428250
15627	ectoderm + SCNT endoderm cell + h3-3a.L{K4M} - NF11	GSM2428251_15627.bw	15620	SRR5109897_vs_SRR5109905.txt	GSM2428251,GSM2428252,GSM2428253,GSM2428254