GSE: GSE103240 GSE Title: A Molecular Atlas of the Developing Ectoderm De... Xenbase Article Id: XB-ART-54144 Pubmed Id: 29049289 FTP Location: ftp:/xenbaseturbofrog.org/genomics/GEO5/GSE103240/XENLA_10.1/RNA-Seq/ NGS Data: RNA-Seq Folder Descriptions: BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes. ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively. DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes. Track # Track Name BigWig Control Track # DE-Analysis GSMs 1720 WE - NF14 GSM2758863_1720.bw GSM2758863,GSM2758864 1733 WE - NF12.5 GSM2758870_1733.bw GSM2758870,GSM2758877 1741 WE - NF16-17 GSM2758873_1741.bw GSM2758873,GSM2758880 1730 pre-chordal neural plate border - NF14 GSM2758809_1730.bw 1720 SRR5988498_vs_SRR5988444.txt GSM2758809,GSM2758841,GSM2758849,GSM2758856,GSM2758865,GSM2758866 1721 chordal neural plate border - NF14 GSM2758810_1721.bw 1720 SRR5988498_vs_SRR5988445.txt GSM2758810,GSM2758842,GSM2758853,GSM2758857,GSM2758867 1731 neural crest - NF17 GSM2758811_1731.bw 1741 SRR5988508_vs_SRR5988446.txt GSM2758811,GSM2758812,GSM2758882,GSM2758884 1727 neural plate border - NF14 GSM2758813_1727.bw 1720 SRR5988498_vs_SRR5988448.txt GSM2758813,GSM2758814,GSM2758883,GSM2758887 1724 neural plate - NF14 GSM2758815_1724.bw 1720 SRR5988498_vs_SRR5988450.txt GSM2758815,GSM2758816 1728 chordal neural plate - NF12.5 GSM2758817_1728.bw 1733 SRR5988505_vs_SRR5988452.txt GSM2758817,GSM2758824,GSM2758832 1722 chordal neural plate border - NF12.5 GSM2758818_1722.bw 1733 SRR5988505_vs_SRR5988453.txt GSM2758818,GSM2758825,GSM2758833 1734 lateral neural plate border - NF12.5 GSM2758819_1734.bw 1733 SRR5988505_vs_SRR5988454.txt GSM2758819,GSM2758826,GSM2758834 1743 non-neural ectoderm - NF12.5 GSM2758820_1743.bw 1733 SRR5988505_vs_SRR5988455.txt GSM2758820,GSM2758827,GSM2758835 1729 pre-chordal neural plate - NF12.5 GSM2758821_1729.bw 1733 SRR5988505_vs_SRR5988456.txt GSM2758821,GSM2758828,GSM2758836 1738 pre-chordal neural plate border - NF12.5 GSM2758822_1738.bw 1733 SRR5988505_vs_SRR5988457.txt GSM2758822,GSM2758829,GSM2758831,GSM2758837 1732 pre-chordal neural plate border, preplacodal ectoderm - NF12.5 GSM2758823_1732.bw 1733 SRR5988505_vs_SRR5988458.txt GSM2758823,GSM2758830,GSM2758838 1725 pre-chordal neural plate - NF14 GSM2758839_1725.bw 1720 SRR5988498_vs_SRR5988474.txt GSM2758839,GSM2758845,GSM2758847 1745 chordal neural plate - NF14 GSM2758840_1745.bw 1720 SRR5988498_vs_SRR5988475.txt GSM2758840,GSM2758848,GSM2758855,GSM2758860 1735 anterior non-neural ectoderm - NF14 GSM2758843_1735.bw 1720 SRR5988498_vs_SRR5988478.txt GSM2758843,GSM2758858,GSM2758861 1726 posterior non-neural ectoderm - NF14 GSM2758844_1726.bw 1720 SRR5988498_vs_SRR5988479.txt GSM2758844,GSM2758850,GSM2758851 1723 anterior neural fold, preplacodal ectoderm - NF14 GSM2758846_1723.bw 1720 SRR5988498_vs_SRR5988481.txt GSM2758846,GSM2758852,GSM2758854,GSM2758859,GSM2758862 1740 WE - NF11.5 GSM2758868_1740.bw GSM2758868,GSM2758875 1736 WE - NF12 GSM2758869_1736.bw GSM2758869,GSM2758876 1742 WE - NF13 GSM2758871_1742.bw GSM2758871,GSM2758878 1744 WE - NF14-15 GSM2758872_1744.bw GSM2758872,GSM2758879 1739 WE - NF18-19 GSM2758874_1739.bw GSM2758874,GSM2758881 1737 preplacodal ectoderm - NF17 GSM2758885_1737.bw 1741 SRR5988508_vs_SRR5988520.txt GSM2758885,GSM2758886