GSE: GSE113186 GSE Title: The role of maternal pioneer factors in predefi... Xenbase Article Id: XB-ART-56302 Pubmed Id: 31537794 FTP Location: ftp:/xenbaseturbofrog.org/genomics/GEO5/GSE113186/XENTR_10.0/RNA-Seq/ NGS Data: RNA-Seq Folder Descriptions: BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes. ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively. DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes. Track # Track Name BigWig Control Track # DE-Analysis GSMs 15579 WE - NF8 MBT GSM3099537_15579.bw GSM3099537,GSM3099538,GSM3099539 15580 WE - NF9 GSM3099540_15580.bw GSM3099540,GSM3099541,GSM3099542 15572 WE - NF10 GSM3099543_15572.bw GSM3099543,GSM3099544,GSM3099545 15582 WE - NF8 MBT GSM3099564_15582.bw GSM3099564,GSM3099565,GSM3099566 15583 WE - NF9 GSM3099567_15583.bw GSM3099567,GSM3099568,GSM3099569 15581 WE - NF10 GSM3099570_15581.bw GSM3099570,GSM3099571,GSM3099572 15526 WE + DMSO - NF8 MBT GSM3099591_15526.bw GSM3099591,GSM3099592,GSM3099593 15527 WE + DMSO - NF9 GSM3099594_15527.bw GSM3099594,GSM3099595,GSM3099596 15525 WE + DMSO - NF10 GSM3099597_15525.bw GSM3099597,GSM3099598,GSM3099599 15514 WE + alpha-amanitin - NF8 MBT GSM3099528_15514.bw 15579 SRR7010166_vs_SRR7010157.txt GSM3099528,GSM3099529,GSM3099530 15494 WE + alpha-amanitin - NF9 GSM3099531_15494.bw 15580 SRR7010169_vs_SRR7010160.txt GSM3099531,GSM3099532,GSM3099533 15492 WE + alpha-amanitin - NF10 GSM3099534_15492.bw 15572 SRR7010172_vs_SRR7010163.txt GSM3099534,GSM3099535,GSM3099536 15506 WE + ctnnb1 MO - NF8 MBT GSM3099546_15506.bw 15582 SRR7010193_vs_SRR7010175.txt GSM3099546,GSM3099547,GSM3099548 15545 WE + ctnnb1 MO - NF9 GSM3099549_15545.bw 15583 SRR7010196_vs_SRR7010178.txt GSM3099549,GSM3099550,GSM3099551 15505 WE + ctnnb1 MO - NF10 GSM3099552_15505.bw 15581 SRR7010199_vs_SRR7010181.txt GSM3099552,GSM3099553,GSM3099554 15574 WE + hbg1 cMO - NF8 MBT GSM3099555_15574.bw 15582 SRR7010193_vs_SRR7010184.txt GSM3099555,GSM3099556,GSM3099557 15575 WE + hbg1 cMO - NF9 GSM3099558_15575.bw 15583 SRR7010196_vs_SRR7010187.txt GSM3099558,GSM3099559,GSM3099560 15573 WE + hbg1 cMO - NF10 GSM3099561_15573.bw 15581 SRR7010199_vs_SRR7010190.txt GSM3099561,GSM3099562,GSM3099563 15519 WE + SB431542 - NF8 MBT GSM3099573_15519.bw 15526 SRR7010220_vs_SRR7010202.txt GSM3099573,GSM3099574,GSM3099575 15520 WE + SB431542 - NF9 GSM3099576_15520.bw 15527 SRR7010223_vs_SRR7010205.txt GSM3099576,GSM3099577,GSM3099578 15518 WE + SB431542 - NF10 GSM3099579_15518.bw 15525 SRR7010226_vs_SRR7010208.txt GSM3099579,GSM3099580,GSM3099581 15490 WE + LDN193189 - NF8 MBT GSM3099582_15490.bw 15526 SRR7010220_vs_SRR7010211.txt GSM3099582,GSM3099583,GSM3099584 15491 WE + LDN193189 - NF9 GSM3099585_15491.bw 15527 SRR7010223_vs_SRR7010214.txt GSM3099585,GSM3099586,GSM3099587 15489 WE + LDN193189 - NF10 GSM3099588_15489.bw 15525 SRR7010226_vs_SRR7010217.txt GSM3099588,GSM3099589,GSM3099590 15585 WE - NF8 MBT GSM3099618_15585.bw GSM3099618,GSM3099619,GSM3099620 15586 WE - NF9 GSM3099621_15586.bw GSM3099621,GSM3099622,GSM3099623 15584 WE - NF10 GSM3099624_15584.bw GSM3099624,GSM3099625,GSM3099626 15588 WE - NF8 MBT GSM3099645_15588.bw GSM3099645,GSM3099646,GSM3099647 15589 WE - NF9 GSM3099648_15589.bw GSM3099648,GSM3099649,GSM3099650 15587 WE - NF10 GSM3099651_15587.bw GSM3099651,GSM3099652,GSM3099653 15499 WE + pou5f3.2 MO + pou5f3.3 MO - NF8 MBT GSM3099600_15499.bw 15585 SRR7010247_vs_SRR7010229.txt GSM3099600,GSM3099601,GSM3099602 15563 WE + pou5f3.2 MO + pou5f3.3 MO - NF9 GSM3099603_15563.bw 15586 SRR7010250_vs_SRR7010232.txt GSM3099603,GSM3099604,GSM3099605 15562 WE + pou5f3.2 MO + pou5f3.3 MO - NF10 GSM3099606_15562.bw 15584 SRR7010253_vs_SRR7010235.txt GSM3099606,GSM3099607,GSM3099608 15565 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF8 MBT GSM3099609_15565.bw 15585 SRR7010247_vs_SRR7010238.txt GSM3099609,GSM3099610,GSM3099611 15507 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF9 GSM3099612_15507.bw 15586 SRR7010250_vs_SRR7010241.txt GSM3099612,GSM3099613,GSM3099614 15564 WE + pou5f3.2 MO + pou5f3.3 MO + sox3 MO - NF10 GSM3099615_15564.bw 15584 SRR7010253_vs_SRR7010244.txt GSM3099615,GSM3099616,GSM3099617 15567 WE + vegt MO - NF8 MBT GSM3099627_15567.bw 15588 SRR7010274_vs_SRR7010256.txt GSM3099627,GSM3099628,GSM3099629 15568 WE + vegt MO - NF9 GSM3099630_15568.bw 15589 SRR7010277_vs_SRR7010259.txt GSM3099630,GSM3099631,GSM3099632 15566 WE + vegt MO - NF10 GSM3099633_15566.bw 15587 SRR7010280_vs_SRR7010262.txt GSM3099633,GSM3099634,GSM3099635 15577 WE + hbg1 cMO - NF8 MBT GSM3099636_15577.bw 15588 SRR7010274_vs_SRR7010265.txt GSM3099636,GSM3099637,GSM3099638 15578 WE + hbg1 cMO - NF9 GSM3099639_15578.bw 15589 SRR7010277_vs_SRR7010268.txt GSM3099639,GSM3099640,GSM3099641 15576 WE + hbg1 cMO - NF10 GSM3099642_15576.bw 15587 SRR7010280_vs_SRR7010271.txt GSM3099642,GSM3099643,GSM3099644