GSE: GSE56242 GSE Title: High-resolution analysis of gene activity durin... Xenbase Article Id: XB-ART-48872 Pubmed Id: 24757007 Download Location: https://bigFrog.xenbase.org/xenbase/genomics/GEO/GSE56242/XENTR_10.0/RNA-Seq/ NGS Data: RNA-Seq Folder Descriptions: BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes. ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively. DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes. Track # Track Name BigWig Control Track # DE-Analysis GSMs 1594 WE - NF1 (0.0hpf) - Series1 GSM1357541_1594.bw GSM1357541 1575 WE - NF1 (0.5hpf) - Series1 GSM1357542_1575.bw GSM1357542 1561 WE - NF2 (1.0hpf) - Series1 GSM1357543_1561.bw GSM1357543 1572 WE - NF3 (1.5hpf) - Series1 GSM1357544_1572.bw GSM1357544 1602 WE - NF5 (2.0hpf) - Series1 GSM1357545_1602.bw GSM1357545 1591 WE - NF6 (2.5hpf) - Series1 GSM1357546_1591.bw GSM1357546 1586 WE - NF7 (3.0hpf) - Series1 GSM1357547_1586.bw GSM1357547 1587 WE - NF6 (2.5hpf) - Series2 GSM1357548_1587.bw GSM1357548 1589 WE - NF7 (3.0hpf) - Series2 GSM1357549_1589.bw GSM1357549 1597 WE - NF7 (3.5hpf) - Series2 GSM1357550_1597.bw GSM1357550 1601 WE - NF8 (4.0hpf) - Series2 GSM1357551_1601.bw GSM1357551 1570 WE - NF8 (4.5hpf) - Series2 GSM1357552_1570.bw GSM1357552,GSM1357563 1573 WE - NF8 (5.0hpf) - Series2 GSM1357553_1573.bw GSM1357553 1557 WE - NF9 (5.5hpf) - Series2 GSM1357554_1557.bw GSM1357554 1584 WE - NF9 (6.0hpf) - Series2 GSM1357555_1584.bw GSM1357555 1596 WE - NF9 (6.5hpf) - Series2 GSM1357556_1596.bw GSM1357556,GSM1357564 1603 WE - NF10 (7.0hpf) - Series2 GSM1357557_1603.bw GSM1357557 1580 WE - NF10.25 (7.5hpf) - Series2 GSM1357558_1580.bw GSM1357558 1582 WE - NF10.5 (8.0hpf) - Series2 GSM1357559_1582.bw GSM1357559 1595 WE - NF10.5 (8.5hpf) - Series2 GSM1357560_1595.bw GSM1357560 1568 WE - NF11 (9.0hpf) - Series2 GSM1357561_1568.bw GSM1357561 1564 WE - NF11.5 (9.5hpf) - Series2 GSM1357562_1564.bw GSM1357562 1578 WE - NF1 (0.0hpf) - Series3 GSM1357565_1578.bw GSM1357565 1585 WE - NF1 (0.5hpf) - Series3 GSM1357566_1585.bw GSM1357566 1579 WE - NF2 (1.0hpf) - Series3 GSM1357567_1579.bw GSM1357567 1590 WE - NF2 (1.5hpf) - Series3 GSM1357568_1590.bw GSM1357568 1600 WE - NF4 (2.0hpf) - Series3 GSM1357569_1600.bw GSM1357569 1556 WE - NF5 (2.5hpf) - Series3 GSM1357570_1556.bw GSM1357570 1592 WE - NF6 (3.0hpf) - Series3 GSM1357571_1592.bw GSM1357571 1593 WE - NF6 (3.5hpf) - Series3 GSM1357572_1593.bw GSM1357572 1574 WE - NF7 (4.0hpf) - Series3 GSM1357573_1574.bw GSM1357573 1583 WE - NF7 (4.5hpf) - Series3 GSM1357574_1583.bw GSM1357574 1569 WE - NF8 (5.0hpf) - Series3 GSM1357575_1569.bw GSM1357575 1577 WE - NF8 (5.5hpf) - Series3 GSM1357576_1577.bw GSM1357576 1604 WE - NF8 (6.0hpf) - Series3 GSM1357577_1604.bw GSM1357577 1581 WE - NF8 (6.5hpf) - Series3 GSM1357578_1581.bw GSM1357578 1567 WE - NF9 (7.0hpf) - Series3 GSM1357579_1567.bw GSM1357579 1565 WE - NF9 (7.5hpf) - Series3 GSM1357580_1565.bw GSM1357580 1562 WE - NF9 (8.0hpf) - Series3 GSM1357581_1562.bw GSM1357581 1588 WE - NF9 (8.5hpf) - Series3 GSM1357582_1588.bw GSM1357582 1571 WE - NF10 (9.0hpf) - Series3 GSM1357583_1571.bw GSM1357583 1563 WE - NF1 (0.0hpf) - Series3 rd GSM1357584_1563.bw GSM1357584 1605 WE - NF2 (1.0hpf) - Series3 rd GSM1357585_1605.bw GSM1357585 1599 WE - NF4 (2.0hpf) - Series3 rd GSM1357586_1599.bw GSM1357586 1566 WE - NF6 (3.0hpf) - Series3 rd GSM1357587_1566.bw GSM1357587 1598 WE - NF7 (4.0hpf) - Series3 rd GSM1357588_1598.bw GSM1357588 1576 WE - NF8 (5.0hpf) - Series3 rd GSM1357589_1576.bw GSM1357589 1560 WE - NF8 (6.0hpf) - Series3 rd GSM1357590_1560.bw GSM1357590 1559 WE - NF9 (7.0hpf) - Series3 rd GSM1357591_1559.bw GSM1357591 1558 WE - NF9 (8.0hpf) - Series3 rd GSM1357592_1558.bw GSM1357592