GSE: GSE87653
GSE Title: Genomic integration of Wnt/b-catenin and BMP/Sm...
Xenbase Article Id: XB-ART-53106
Pubmed Id: 28219948
Download Location: https://bigFrog.xenbase.org/xenbase/genomics/GEO/GSE87653/XENLA_10.1/RNA-Seq/
NGS Data: RNA-Seq
Folder Descriptions:
	BigWigs: .bw files in the folder represent binary format of mapped read intensity in the genome. These files can be used for visualization purposes.
	ExpressionFiles: Genes_TPM_Matrix.txt and Genes_Counts_Matrix.txt provide TPM and raw counts of genes across samples respectively.
	DE_Analysis: Differential Expression results between conditions. LogFC and FDR values can used to obtain differentially expressed genes.

Track #	Track Name	BigWig	Control Track #	DE-Analysis	GSMs
1443	foregut - NF20	GSM2337691_1443.bw			GSM2337691,GSM2337692,GSM2337693
1431	hindgut - NF20	GSM2337700_1431.bw			GSM2337700,GSM2337701,GSM2337702
1450	foregut - NF20	GSM2337712_1450.bw			GSM2337712,GSM2337713
1445	hindgut - NF20	GSM2337716_1445.bw			GSM2337716,GSM2337717
1440	foregut + DMH1 - NF20	GSM2337694_1440.bw	1443	SRR4346410_vs_SRR4346413.txt	GSM2337694,GSM2337695,GSM2337696
1442	foregut + BIO - NF20	GSM2337697_1442.bw	1443	SRR4346410_vs_SRR4346416.txt	GSM2337697,GSM2337698,GSM2337699
1433	hindgut + DMH1 - NF20	GSM2337703_1433.bw	1431	SRR4346419_vs_SRR4346422.txt	GSM2337703,GSM2337704,GSM2337705
1436	hindgut + BIO - NF20	GSM2337706_1436.bw	1431	SRR4346419_vs_SRR4346425.txt	GSM2337706,GSM2337707,GSM2337708
1453	dorsal embryo - NF20	GSM2337709_1453.bw			GSM2337709,GSM2337710,GSM2337711
1447	foregut + dkk1 - NF20	GSM2337714_1447.bw	1450	SRR4346431_vs_SRR4346433.txt	GSM2337714,GSM2337715
1427	hindgut + dkk1 - NF20	GSM2337718_1427.bw	1445	SRR4346435_vs_SRR4346437.txt	GSM2337718,GSM2337719
1441	foregut endoderm - NF20	GSM2337720_1441.bw			GSM2337720,GSM2337721
1439	foregut mesoderm - NF20	GSM2337722_1439.bw			GSM2337722,GSM2337723
1449	hindgut endoderm - NF20	GSM2337724_1449.bw			GSM2337724,GSM2337725
1430	hindgut mesoderm - NF20	GSM2337726_1430.bw			GSM2337726,GSM2337727